Detailed information of SNP:
|
SNP ID:
sf1109069615(Gbrowse)
Chromosome: chr11 Position: 9069615 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.80% | 29.20% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 39.24% | 60.76% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109069615 | C->A | LOC_Os11g16410(LOC_Os11g16410.4) | INTRON |
| sf1109069615 | C->A | LOC_Os11g16410(LOC_Os11g16410.3) | INTRON |
| sf1109069615 | C->A | LOC_Os11g16410(LOC_Os11g16410.2) | INTRON |
| sf1109069615 | C->A | LOC_Os11g16410(LOC_Os11g16410.1) | INTRON |
| sf1109069615 | C->A | LOC_Os11g16410(LOC_Os11g16410.5) | INTRON |