Detailed information of SNP:
|
SNP ID:
sf1109083816(Gbrowse)
Chromosome: chr11 Position: 9083816 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 77.16% | 22.84% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 443 | 45.60% | 54.40% |
| Aus | 59 | 25.42% | 74.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 291 | 41.24% | 58.76% |
| Tropical Japonica | 88 | 62.50% | 37.50% |
| Japonica Intermediate | 64 | 42.19% | 57.81% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109083816 | G->A | INTERGENIC | None |