Detailed information of SNP:
|
SNP ID:
sf1109123966(Gbrowse)
Chromosome: chr11 Position: 9123966 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 51.41% | 48.59% |
| All Indica | 795 | 86.29% | 13.71% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 210 | 66.19% | 33.81% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109123966 | T->C | LOC_Os11g16490(LOC_Os11g16490.1) | Non-Synonymous SNP |