Detailed information of SNP:
|
SNP ID:
sf1109136251(Gbrowse)
Chromosome: chr11 Position: 9136251 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.81% | 41.19% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 489 | 3.27% | 96.73% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 333 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 63 | 6.35% | 93.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109136251 | T->G | INTERGENIC | None |