Detailed information of SNP:
|
SNP ID:
sf1109201520(Gbrowse)
Chromosome: chr11 Position: 9201520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.71% | 5.29% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109201520 | G->A | INTERGENIC | None |