Detailed information of SNP:
|
SNP ID:
sf1109204305(Gbrowse)
Chromosome: chr11 Position: 9204305 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 59.84% | 40.16% |
| All Indica | 779 | 31.07% | 68.93% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 361 | 13.02% | 86.98% |
| Indica II | 210 | 52.86% | 47.14% |
| Indica Intermediate | 208 | 40.38% | 59.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109204305 | C->T | LOC_Os11g16610(LOC_Os11g16610.1) | INTRON |
| sf1109204305 | C->T | LOC_Os11g16610(LOC_Os11g16610.1) | SNPs that disrupt splice sites |