Detailed information of SNP:
|
SNP ID:
sf1109236068(Gbrowse)
Chromosome: chr11 Position: 9236068 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1186 | 81.87% | 18.13% |
| All Indica | 774 | 99.61% | 0.39% |
| All Japonica | 306 | 50.33% | 49.67% |
| Aus | 58 | 10.34% | 89.66% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 201 | 98.51% | 1.49% |
| Indica Intermediate | 204 | 100.00% | 0.00% |
| Temperate Japonica | 200 | 41.00% | 59.00% |
| Tropical Japonica | 66 | 83.33% | 16.67% |
| Japonica Intermediate | 40 | 42.50% | 57.50% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109236068 | A->C | LOC_Os11g16670(LOC_Os11g16670.1) | Non-Synonymous SNP |