Detailed information of SNP:
|
SNP ID:
sf1109238555(Gbrowse)
Chromosome: chr11 Position: 9238555 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 95.41% | 4.59% |
| All Indica | 736 | 91.85% | 8.15% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 90.94% | 9.06% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 183 | 86.34% | 13.66% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109238555 | A->G | INTERGENIC | None |