Detailed information of SNP:
|
SNP ID:
sf1109247463(Gbrowse)
Chromosome: chr11 Position: 9247463 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1206 | 78.52% | 21.48% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 309 | 40.13% | 59.87% |
| Aus | 55 | 16.36% | 83.64% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 207 | 31.40% | 68.60% |
| Tropical Japonica | 57 | 64.91% | 35.09% |
| Japonica Intermediate | 45 | 48.89% | 51.11% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 35 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109247463 | T->C | INTERGENIC | None |