Detailed information of SNP:
|
SNP ID:
sf1109255565(Gbrowse)
Chromosome: chr11 Position: 9255565 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 75.38% | 24.62% |
| All Indica | 773 | 60.28% | 39.72% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 77.44% | 22.56% |
| Indica II | 207 | 36.23% | 63.77% |
| Indica Intermediate | 207 | 54.59% | 45.41% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109255565 | T->G | LOC_Os11g16710(LOC_Os11g16710.1) | Non-Synonymous SNP |