Detailed information of SNP:
|
SNP ID:
sf1109257204(Gbrowse)
Chromosome: chr11 Position: 9257204 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 84.07% | 15.93% |
| All Indica | 793 | 75.28% | 24.72% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109257204 | C->T | INTERGENIC | None |