Detailed information of SNP:
|
SNP ID:
sf1109257794(Gbrowse)
Chromosome: chr11 Position: 9257794 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 82.87% | 17.13% |
| All Indica | 793 | 73.39% | 26.61% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 87.94% | 12.06% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109257794 | C->T | INTERGENIC | None |