Detailed information of SNP:
|
SNP ID:
sf1109261040(Gbrowse)
Chromosome: chr11 Position: 9261040 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1153 | 88.64% | 11.36% |
| All Indica | 621 | 80.84% | 19.16% |
| All Japonica | 422 | 99.29% | 0.71% |
| Aus | 59 | 96.61% | 3.39% |
| Indica I | 255 | 96.86% | 3.14% |
| Indica II | 182 | 55.49% | 44.51% |
| Indica Intermediate | 184 | 83.70% | 16.30% |
| Temperate Japonica | 277 | 99.28% | 0.72% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109261040 | G->A | INTERGENIC | None |