Detailed information of SNP:
|
SNP ID:
sf1109265368(Gbrowse)
Chromosome: chr11 Position: 9265368 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 84.67% | 15.33% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 448 | 56.47% | 43.53% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 300 | 60.00% | 40.00% |
| Tropical Japonica | 87 | 42.53% | 57.47% |
| Japonica Intermediate | 61 | 59.02% | 40.98% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109265368 | C->T | LOC_Os11g16730(LOC_Os11g16730.1) | INTRON |