Detailed information of SNP:
|
SNP ID:
sf1109317508(Gbrowse)
Chromosome: chr11 Position: 9317508 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 97.88% | 2.12% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109317508 | G->T | INTERGENIC | None |