Detailed information of SNP:
|
SNP ID:
sf1109331586(Gbrowse)
Chromosome: chr11 Position: 9331586 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.79% | 45.21% |
| All Indica | 788 | 91.88% | 8.12% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 370 | 97.57% | 2.43% |
| Indica II | 210 | 83.81% | 16.19% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109331586 | A->C | INTERGENIC | None |