Detailed information of SNP:
|
SNP ID:
sf1109415912(Gbrowse)
Chromosome: chr11 Position: 9415912 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 59.47% | 40.53% |
| All Indica | 794 | 98.99% | 1.01% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 92 | 3.26% | 96.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109415912 | T->C | INTERGENIC | None |