Detailed information of SNP:
|
SNP ID:
sf1109434586(Gbrowse)
Chromosome: chr11 Position: 9434586 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.35% | 40.65% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109434586 | A->G | INTERGENIC | None |