Detailed information of SNP:
|
SNP ID:
sf1109461965(Gbrowse)
Chromosome: chr11 Position: 9461965 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.30% | 12.70% |
| All Indica | 797 | 86.32% | 13.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 61.79% | 38.21% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109461965 | C->T | INTERGENIC | None |