Detailed information of SNP:
|
SNP ID:
sf1109478789(Gbrowse)
Chromosome: chr11 Position: 9478789 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.14% | 36.86% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109478789 | C->A | INTERGENIC | None |