Detailed information of SNP:
|
SNP ID:
sf1109487691(Gbrowse)
Chromosome: chr11 Position: 9487691 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 62.66% | 37.34% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109487691 | C->G | INTERGENIC | None |