Detailed information of SNP:
|
SNP ID:
sf1109523988(Gbrowse)
Chromosome: chr11 Position: 9523988 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 58.20% | 41.80% |
| All Indica | 792 | 92.42% | 7.58% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109523988 | A->G | LOC_Os11g17160(LOC_Os11g17160.1) | INTRON |