Detailed information of SNP:
|
SNP ID:
sf1109524562(Gbrowse)
Chromosome: chr11 Position: 9524562 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 54.63% | 45.37% |
| All Indica | 790 | 86.84% | 13.16% |
| All Japonica | 494 | 1.62% | 98.38% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 368 | 86.14% | 13.86% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109524562 | G->T | LOC_Os11g17160(LOC_Os11g17160.1) | Synonymous |