Detailed information of SNP:
|
SNP ID:
sf1109524688(Gbrowse)
Chromosome: chr11 Position: 9524688 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 56.67% | 43.33% |
| All Indica | 780 | 90.13% | 9.87% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 363 | 89.26% | 10.74% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109524688 | G->A | LOC_Os11g17160(LOC_Os11g17160.1) | INTRON |