Detailed information of SNP:
|
SNP ID:
sf1109524892(Gbrowse)
Chromosome: chr11 Position: 9524892 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1287 | 61.77% | 38.23% |
| All Indica | 678 | 35.55% | 64.45% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 58 | 48.28% | 51.72% |
| Indica I | 329 | 34.65% | 65.35% |
| Indica II | 177 | 40.11% | 59.89% |
| Indica Intermediate | 172 | 32.56% | 67.44% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109524892 | G->A | LOC_Os11g17160(LOC_Os11g17160.1) | Synonymous |