Detailed information of SNP:
|
SNP ID:
sf1109524903(Gbrowse)
Chromosome: chr11 Position: 9524903 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 50.22% | 49.78% |
| All Indica | 777 | 79.28% | 20.72% |
| All Japonica | 495 | 3.64% | 96.36% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 362 | 78.45% | 21.55% |
| Indica II | 209 | 79.90% | 20.10% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109524903 | T->C | LOC_Os11g17160(LOC_Os11g17160.1) | Non-Synonymous SNP |