Detailed information of SNP:
|
SNP ID:
sf1109533510(Gbrowse)
Chromosome: chr11 Position: 9533510 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 81.72% | 18.28% |
| All Indica | 746 | 69.97% | 30.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 353 | 69.69% | 30.31% |
| Indica II | 199 | 73.87% | 26.13% |
| Indica Intermediate | 194 | 66.49% | 33.51% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109533510 | T->G | LOC_Os11g17170(LOC_Os11g17170.1) | INTRON |