Detailed information of SNP:
|
SNP ID:
sf1109534229(Gbrowse)
Chromosome: chr11 Position: 9534229 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 81.49% | 18.51% |
| All Indica | 767 | 68.97% | 31.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 361 | 68.98% | 31.02% |
| Indica II | 200 | 72.00% | 28.00% |
| Indica Intermediate | 206 | 66.02% | 33.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109534229 | T->C | LOC_Os11g17170(LOC_Os11g17170.1) | Non-Synonymous SNP |