Detailed information of SNP:
|
SNP ID:
sf1109552612(Gbrowse)
Chromosome: chr11 Position: 9552612 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 50.19% | 49.81% |
| All Indica | 737 | 80.19% | 19.81% |
| All Japonica | 492 | 2.85% | 97.15% |
| Aus | 58 | 75.86% | 24.14% |
| Indica I | 345 | 81.45% | 18.55% |
| Indica II | 199 | 83.92% | 16.08% |
| Indica Intermediate | 193 | 74.09% | 25.91% |
| Temperate Japonica | 333 | 2.70% | 97.30% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109552612 | A->G | INTERGENIC | None |