Detailed information of SNP:
|
SNP ID:
sf1109555713(Gbrowse)
Chromosome: chr11 Position: 9555713 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.44% | 12.56% |
| All Indica | 797 | 78.92% | 21.08% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 66.49% | 33.51% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109555713 | G->A | INTERGENIC | None |