Detailed information of SNP:
SNP ID:
sf1109597730(Gbrowse)
Chromosome: chr11 Position: 9597730 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1353 | 95.27% | 4.73% |
All Indica | 743 | 91.79% | 8.21% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 61 | 98.36% | 1.64% |
Indica I | 355 | 91.55% | 8.45% |
Indica II | 199 | 91.96% | 8.04% |
Indica Intermediate | 189 | 92.06% | 7.94% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1109597730 | G->A | LOC_Os11g17230(LOC_Os11g17230.1) | Synonymous |