Detailed information of SNP:
|
SNP ID:
sf1109598807(Gbrowse)
Chromosome: chr11 Position: 9598807 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 97.32% | 2.68% |
| All Indica | 763 | 95.67% | 4.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 358 | 98.88% | 1.12% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 200 | 91.50% | 8.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109598807 | G->A | LOC_Os11g17240(LOC_Os11g17240.1) | Synonymous |