Detailed information of SNP:
|
SNP ID:
sf1109626100(Gbrowse)
Chromosome: chr11 Position: 9626100 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 72.12% | 27.88% |
| All Indica | 738 | 52.03% | 47.97% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 344 | 51.16% | 48.84% |
| Indica II | 197 | 53.30% | 46.70% |
| Indica Intermediate | 197 | 52.28% | 47.72% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109626100 | G->A | LOC_Os11g17290(LOC_Os11g17290.2) | Synonymous |
| sf1109626100 | G->A | LOC_Os11g17290(LOC_Os11g17290.1) | Synonymous |
| sf1109626100 | G->A | LOC_Os11g17290(LOC_Os11g17290.3) | Synonymous |