Detailed information of SNP:
|
SNP ID:
sf1109698493(Gbrowse)
Chromosome: chr11 Position: 9698493 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 58.58% | 41.42% |
| All Indica | 790 | 89.75% | 10.25% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 206 | 79.13% | 20.87% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109698493 | T->G | INTERGENIC | None |