Detailed information of SNP:
|
SNP ID:
sf1109704822(Gbrowse)
Chromosome: chr11 Position: 9704822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.56% | 3.44% |
| All Indica | 777 | 93.95% | 6.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 92.62% | 7.38% |
| Indica II | 207 | 97.10% | 2.90% |
| Indica Intermediate | 204 | 93.14% | 6.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109704822 | C->T | LOC_Os11g17410(LOC_Os11g17410.1) | SNPs that introduce stop codons |