Detailed information of SNP:



SNP ID: sf1109704822(Gbrowse)

Chromosome: chr11

Position: 9704822
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1397 96.56% 3.44%
All Indica777 93.95% 6.05%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I366 92.62% 7.38%
Indica II207 97.10% 2.90%
Indica Intermediate204 93.14% 6.86%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1109704822 C->T LOC_Os11g17410(LOC_Os11g17410.1) SNPs that introduce stop codons