Detailed information of SNP:
|
SNP ID:
sf1109723863(Gbrowse)
Chromosome: chr11 Position: 9723863 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.68% | 47.32% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109723863 | G->A | INTERGENIC | None |