Detailed information of SNP:
|
SNP ID:
sf1109761732(Gbrowse)
Chromosome: chr11 Position: 9761732 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.15% | 21.85% |
| All Indica | 799 | 63.95% | 36.05% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 40.53% | 59.47% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109761732 | A->G | INTERGENIC | None |