Detailed information of SNP:
|
SNP ID:
sf1109774489(Gbrowse)
Chromosome: chr11 Position: 9774489 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 84.05% | 15.95% |
| All Indica | 795 | 80.50% | 19.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 14.06% | 85.94% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 211 | 73.93% | 26.07% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109774489 | C->T | INTERGENIC | None |