Detailed information of SNP:
|
SNP ID:
sf1109781698(Gbrowse)
Chromosome: chr11 Position: 9781698 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 61.96% | 38.04% |
| All Indica | 790 | 41.90% | 58.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 371 | 22.37% | 77.63% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 206 | 57.77% | 42.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109781698 | A->T | INTERGENIC | None |