Detailed information of SNP:
|
SNP ID:
sf1109787637(Gbrowse)
Chromosome: chr11 Position: 9787637 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 87.94% | 12.06% |
| All Indica | 798 | 80.33% | 19.67% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109787637 | C->T | INTERGENIC | None |