Detailed information of SNP:
|
SNP ID:
sf1109840108(Gbrowse)
Chromosome: chr11 Position: 9840108 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 86.99% | 13.01% |
| All Indica | 780 | 84.87% | 15.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 365 | 84.66% | 15.34% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109840108 | C->T | INTERGENIC | None |