Detailed information of SNP:
|
SNP ID:
sf1109846280(Gbrowse)
Chromosome: chr11 Position: 9846280 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 81.84% | 18.16% |
| All Indica | 795 | 70.44% | 29.56% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 371 | 85.98% | 14.02% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109846280 | C->T | LOC_Os11g17650(LOC_Os11g17650.1) | Synonymous |