Detailed information of SNP:
|
SNP ID:
sf1109859902(Gbrowse)
Chromosome: chr11 Position: 9859902 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 93.82% | 6.18% |
| All Indica | 775 | 89.42% | 10.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 369 | 88.62% | 11.38% |
| Indica II | 204 | 90.20% | 9.80% |
| Indica Intermediate | 202 | 90.10% | 9.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109859902 | G->A | LOC_Os11g17670(LOC_Os11g17670.1) | Non-Synonymous SNP |