Detailed information of SNP:
|
SNP ID:
sf1109860054(Gbrowse)
Chromosome: chr11 Position: 9860054 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 84.94% | 15.06% |
| All Indica | 778 | 77.12% | 22.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 68.25% | 31.75% |
| Indica I | 366 | 83.88% | 16.12% |
| Indica II | 207 | 65.70% | 34.30% |
| Indica Intermediate | 205 | 76.59% | 23.41% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109860054 | G->A | LOC_Os11g17670(LOC_Os11g17670.1) | Synonymous |