Detailed information of SNP:
|
SNP ID:
sf1109860085(Gbrowse)
Chromosome: chr11 Position: 9860085 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 91.03% | 8.97% |
| All Indica | 777 | 87.64% | 12.36% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 202 | 78.22% | 21.78% |
| Indica Intermediate | 205 | 85.37% | 14.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109860085 | T->C | LOC_Os11g17670(LOC_Os11g17670.1) | Non-Synonymous SNP |