Detailed information of SNP:
|
SNP ID:
sf1109864831(Gbrowse)
Chromosome: chr11 Position: 9864831 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 80.36% | 19.64% |
| All Indica | 760 | 66.97% | 33.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 351 | 69.52% | 30.48% |
| Indica II | 202 | 51.98% | 48.02% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109864831 | A->G | LOC_Os11g17690(LOC_Os11g17690.1) | Synonymous |