Detailed information of SNP:
|
SNP ID:
sf1109895787(Gbrowse)
Chromosome: chr11 Position: 9895787 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 84.58% | 15.42% |
| All Indica | 762 | 73.36% | 26.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 66.86% | 33.14% |
| Indica II | 203 | 79.80% | 20.20% |
| Indica Intermediate | 209 | 77.99% | 22.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109895787 | T->G | INTERGENIC | None |