Detailed information of SNP:
|
SNP ID:
sf1109913796(Gbrowse)
Chromosome: chr11 Position: 9913796 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 88.78% | 11.22% |
| All Indica | 748 | 83.16% | 16.84% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 58 | 72.41% | 27.59% |
| Indica I | 356 | 89.61% | 10.39% |
| Indica II | 193 | 74.61% | 25.39% |
| Indica Intermediate | 199 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109913796 | T->C | INTERGENIC | None |