Detailed information of SNP:
|
SNP ID:
sf1109914663(Gbrowse)
Chromosome: chr11 Position: 9914663 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1300 | 84.15% | 15.85% |
| All Indica | 701 | 75.46% | 24.54% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 50 | 56.00% | 44.00% |
| Indica I | 331 | 82.48% | 17.52% |
| Indica II | 179 | 65.92% | 34.08% |
| Indica Intermediate | 191 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109914663 | C->T | INTERGENIC | None |