Detailed information of SNP:



SNP ID: sf1109914663(Gbrowse)

Chromosome: chr11

Position: 9914663
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1300 84.15% 15.85%
All Indica701 75.46% 24.54%
All Japonica496 99.19% 0.81%
Aus50 56.00% 44.00%
Indica I331 82.48% 17.52%
Indica II179 65.92% 34.08%
Indica Intermediate191 72.25% 27.75%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic12 75.00% 25.00%
Intermediate41 87.80% 12.20%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1109914663 C->T INTERGENIC None