Detailed information of SNP:
|
SNP ID:
sf1109918787(Gbrowse)
Chromosome: chr11 Position: 9918787 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 58.35% | 41.65% |
| All Indica | 747 | 31.99% | 68.01% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 58 | 48.28% | 51.72% |
| Indica I | 352 | 24.72% | 75.28% |
| Indica II | 194 | 31.44% | 68.56% |
| Indica Intermediate | 201 | 45.27% | 54.73% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109918787 | C->T | INTERGENIC | None |